Cue: a deep-learning framework for structural variant discovery and genotyping
Victoria Popic, Chris Rohlicek, F. Cunial, I. Hajirasouliha, D. Meleshko, K. Garimella, Anant Maheshwari
Nature Methods, 2023
Diagnostic classification of childhood cancer using multiscale transcriptomics
Federico Comitani, Joshua O Nash, S. Cohen-Gogo, A. Chang, Timmy T. Wen, Anant Maheshwari, Bipasha Goyal, E. Tio, Kevin Tabatabaei, C. Mayoh, Regis Zhao, Ben Ho, L. Brunga, J. E. Lawrence, P. Balogh, A. Flanagan, Sarah A. Teichmann, A. Huang, V. Ramaswamy, J. Hitzler, J. Wasserman, R. Gladdy, B. Dickson, U. Tabori, M. Cowley, S. Behjati, D. Malkin, A. Villani, M. Irwin, A. Shlien
Nature Medicine, 2023
Lineage-defined leiomyosarcoma subtypes emerge years before diagnosis and determine patient survival
Nathaniel D. Anderson, Y. Babichev, F. Fuligni, Federico Comitani, M. Layeghifard, Rosemarie E. Venier, S. Dentro, Anant Maheshwari, S. Guram, Claire Wunker, J. D. Thompson, K. Yuki, Huayun Hou, M. Zatzman, Nicholas Light, M. Bernardini, J. Wunder, I. Andrulis, P. Ferguson, A. Razak, C. Swallow, J. Dowling, R. Al-Awar, R. Marcellus, M. Rouzbahman, M. Gerstung, D. Durocher, L. Alexandrov, B. Dickson, R. Gladdy, A. Shlien
Nature Communications, 2021